R. Apweiler: search on Z-Library

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1

Make Research Data Public?—Not Always so Simple: A Dialogue for Statisticians and Science Editors

Nell Sedransk, Linda J. Young, Katrina L. Kelner, Robert A. Moffitt, Ani Thakar, Jordan Raddick, Edward J. Ungvarsky, Richard W. Carlson, Rolf Apweiler, Lawrence H. Cox, Deborah Nolan, Keith Soper and

Journal:

Statistical Science

Year:

2010

Language:

english

File:

PDF, 1.56 MB

english, 2010

2

Biomolecular Data Resources: Bioinformatics Infrastructure for Biomedical Data Science

Vamathevan, Jessica, Apweiler, Rolf, Birney, Ewan

Journal:

Annual Review of Biomedical Data Science

Year:

2019

Language:

english

File:

PDF, 1.02 MB

english, 2019

3

Common interchange standards for proteomics data: Public availability of tools and schema. Report on the Proteomic Standards Initiative Workshop, 2nd Annual HUPO Congress, Montreal, Canada, 8–11th October 2003

Sandra Orchard, Henning Hermjakob, Randall K. Julian Jr., Kai Runte, David Sherman, Jérôme Wojcik, Weimin Zhu, Rolf Apweiler

Journal:

Year:

2004

Language:

english

File:

PDF, 30 KB

english, 2004

4

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

Taylor, Chris F, Field, Dawn, Sansone, Susanna-Assunta, Aerts, Jan, Apweiler, Rolf, Ashburner, Michael, Ball, Catherine A, Binz, Pierre-Alain, Bogue, Molly, Booth, Tim

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 233 KB

english, 2008

5

Large-Scale Genetic Perturbations Reveal Regulatory Networks and an Abundance of Gene-Specific Repressors

Kemmeren, Patrick, Sameith, Katrin, van de Pasch, Loes A.L., Benschop, Joris J., Lenstra, Tineke L., Margaritis, Thanasis, O’Duibhir, Eoghan, Apweiler, Eva, van Wageningen, Sake, Ko, Cheuk W., van Hee

Journal:

Year:

2014

Language:

english

File:

PDF, 16.38 MB

english, 2014

6

Representation of functional information in the SWISS-PROT Data Bank

L.Junker, V., Apweiler, R., Bairoch, A.

Journal:

Year:

1999

Language:

english

File:

PDF, 31 KB

english, 1999

7

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

Ye, K., Schulz, M. H., Long, Q., Apweiler, R., Ning, Z.

Journal:

Year:

2009

Language:

english

File:

PDF, 539 KB

english, 2009

8

The European Bioinformatics Institute in 2017: data coordination and integration

Cook, Charles E, Bergman, Mary T, Cochrane, Guy, Apweiler, Rolf, Birney, Ewan

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.79 MB

english, 2018

9

Whither systems medicine?

Apweiler, Rolf, Beissbarth, Tim, Berthold, Michael R, Blüthgen, Nils, Burmeister, Yvonne, Dammann, Olaf, Deutsch, Andreas, Feuerhake, Friedrich, Franke, Andre, Hasenauer, Jan, Hoffmann, Steve, Höfer,

Journal:

Experimental and Molecular Medicine

Year:

2018

Language:

english

File:

PDF, 502 KB

english, 2018

10

Mus musculus in the SWISS-PROT database: Its relevance to developmental research

Michele Magrane, Rolf Apweiler

Journal:

Year:

2000

Language:

english

File:

PDF, 235 KB

english, 2000

11

TEMBLOR – Perspectives of EBI database services : A presentation for the ESF workshop ‘Data integration in functional genomics and proteomics’

Henning Hermjakob, Rolf Apweiler

Journal:

Comparative and Functional Genomics

Year:

2002

Language:

english

File:

PDF, 102 KB

english, 2002

12

The HUPO Proteomics Standards Initiative meeting: towards common standards for exchanging proteomics data

Sandra Orchard, Paul Kersey, Henning Hermjakob, Rolf Apweiler

Journal:

Comparative and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 66 KB

english, 2003

13

The Gene Ontology Annotation (GOA) project — application of GO in SWISS-PROT, TrEMBL and InterPro

Evelyn Camon, Daniel Barrell, Catherine Brooksbank, Michele Magrane, Rolf Apweiler

Journal:

Comparative and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 79 KB

english, 2003

14

Progress in establishing common standards for exchanging proteomics data : The second meeting of the HUPO Proteomics Standards Initiative

Sandra Orchard, Paul Kersey, Weimin Zhu, Luisa Montecchi-Palazzi, Henning Hermjakob, Rolf Apweiler

Journal:

Comparative and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 80 KB

english, 2003

15

Approaching clinical proteomics: Current state and future fields of application in cellular proteomics

Rolf Apweiler, Charalampos Aslanidis, Thomas Deufel, Andreas Gerstner, Jens Hansen, Dennis Hochstrasser, Roland Kellner, Markus Kubicek, Friedrich Lottspeich, Edmund Maser, Hans-Werner Mewes, Helmut E

Journal:

Cytometry Part A

Year:

2009

Language:

english

File:

PDF, 390 KB

english, 2009

16

Annotating the human proteome: Beyond establishing a parts list

Michael Mueller, Lennart Martens, Rolf Apweiler

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2007

Language:

english

File:

PDF, 1.18 MB

english, 2007

17

“4D Biology for health and disease” workshop report

Jan-Pieter Abrahams, Rolf Apweiler, Rudi Balling, Michela G. Bertero, Janusz M. Bujnicki, Naomi E. Chayen, Patrick Chène, Gary L. Corthals, Tomasz Dyląg, Friedrich Förster, Albert J.R. Heck, Peter J.F

Journal:

New Biotechnology

Year:

2011

Language:

english

File:

PDF, 94 KB

english, 2011

18

Know your limits: Assumptions, constraints and interpretation in systems biology

Garth R. Ilsley, Nicholas M. Luscombe, Rolf Apweiler

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2009

Language:

english

File:

PDF, 922 KB

english, 2009

19

Protein sequence databases

Rolf Apweiler, Amos Bairoch, Cathy H Wu

Journal:

Current Opinion in Chemical Biology

Year:

2004

Language:

english

File:

PDF, 110 KB

english, 2004

20

Consistent integration of non-reliable heterogeneous information resources applied to the annotation of transmembrane proteins

Steffen Möller, Michael Schroeder, Rolf Apweiler

Journal:

Computers & Chemistry

Year:

2001

Language:

english

File:

PDF, 337 KB

english, 2001

21

The speciation of the proteome

Peter R Jungblut, Hermann G Holzhütter, Rolf Apweiler, Hartmut Schlüter

Journal:

Chemistry Central Journal

Year:

2008

Language:

english

File:

PDF, 515 KB

english, 2008

22

Finding one's way in proteomics: a protein species nomenclature

Hartmut Schlüter, Rolf Apweiler, Hermann-Georg Holzhütter, Peter R Jungblut

Journal:

Chemistry Central Journal

Year:

2009

Language:

english

File:

PDF, 267 KB

english, 2009

23

The Proteomics Standards Initiative

Sandra Orchard, Henning Hermjakob, Rolf Apweiler

Journal:

Year:

2003

Language:

english

File:

PDF, 40 KB

english, 2003

24

Further advances in the development of a data interchange standard for proteomics data

Sandra Orchard, Weimin Zhu, Randall K. Julian Jr., Henning Hermjakob, Rolf Apweiler

Journal:

Year:

2003

Language:

english

File:

PDF, 38 KB

english, 2003

25

The International Protein Index: An integrated database for proteomics experiments

Paul J. Kersey, Jorge Duarte, Allyson Williams, Youla Karavidopoulou, Ewan Birney, Rolf Apweiler

Journal:

Year:

2004

Language:

english

File:

PDF, 39 KB

english, 2004

26

Towards data management of the HUPO Human Brain Proteome Project pilot phase

Martin Blüggel, Sonja Bailey, Gerhard Körting, Christian Stephan, Kai A. Reidegeld, Herbert Thiele, Rolf Apweiler, Michael Hamacher, Helmut E. Meyer

Journal:

Year:

2004

Language:

english

File:

PDF, 72 KB

english, 2004

27

Advances in the development of common interchange standards for proteomic data

Sandra Orchard, Chris F. Taylor, Henning Hermjakob, Weimin-Zhu, Randall K. Julian Jr., Rolf Apweiler

Journal:

Year:

2004

Language:

english

File:

PDF, 37 KB

english, 2004

28

Further steps towards data standardisation: The Proteomic Standards Initiative HUPO 3rd annual congress, Beijing 25–27th October, 2004

Sandra Orchard, Henning Hermjakob, Pierre-Alain Binz, Christine Hoogland, Chris F. Taylor, Weimin Zhu, Randall K. Julian Jr., Rolf Apweiler

Journal:

Year:

2005

Language:

english

File:

PDF, 151 KB

english, 2005

29

PRIDE: The proteomics identifications database

Lennart Martens, Henning Hermjakob, Philip Jones, Marcin Adamski, Chris Taylor, David States, Kris Gevaert, Joël Vandekerckhove, Rolf Apweiler

Journal:

Year:

2005

Language:

english

File:

PDF, 1.27 MB

english, 2005

30

Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

Gilbert S. Omenn, David J. States, Marcin Adamski, Thomas W. Blackwell, Rajasree Menon, Henning Hermjakob, Rolf Apweiler, Brian B. Haab, Richard J. Simpson, James S. Eddes, Eugene A. Kapp, Robert L. M

Journal:

Year:

2005

Language:

english

File:

PDF, 344 KB

english, 2005

31

Further Steps in Standardisation Report of the Second Annual Proteomics Standards Initiative Spring Workshop (Siena, Italy 17–20th April 2005)

Sandra Orchard, Henning Hermjakob, Chris F. Taylor, Frank Potthast, Phil Jones, Weimin Zhu, Randall K. Julian Jr., Rolf Apweiler

Journal:

Year:

2005

Language:

english

File:

PDF, 58 KB

english, 2005

32

Human Proteome Organisation Proteomics Standards Initiative Pre-Congress Initiative

Sandra Orchard, Henning Hermjakob, Chris Taylor, Ruedi Aebersold, Rolf Apweiler

Journal:

Year:

2005

Language:

english

File:

PDF, 50 KB

english, 2005

33

Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4–6, 2005

Sandra Orchard, Henning Hermjakob, Chris Taylor, Pierre-Alain Binz, Christine Hoogland, Randall Julian, John S. Garavelli, Ruedi Aebersold, Rolf Apweiler

Journal:

Year:

2006

Language:

english

File:

PDF, 68 KB

english, 2006

34

PRIDE: The proteomics identifications database (vol. 5, Issue 13, pp. 3537-3545)

Lennart Martens, Henning Hermjakob, Philip Jones, Marcin Adamski, Chris Taylor, David States, Kris Gevaert, Joël Vandekerckhove, Rolf Apweiler

Journal:

Year:

2005

File:

PDF, 28 KB

2005

35

Gaining knowledge from previously unexplained spectra-application of the PTM-Explorer software to detect PTM in HUPO BPP MS/MS data

Daniel C. Chamrad, Gerhard Körting, Heike Schäfer, Christian Stephan, Herbert Thiele, Rolf Apweiler, Helmut E. Meyer, Katrin Marcus, Martin Blüggel

Journal:

Year:

2006

Language:

english

File:

PDF, 443 KB

english, 2006

36

Functional annotation of proteins identified in human brain during the HUPO Brain Proteome Project pilot study

Michael Mueller, Lennart Martens, Kai A. Reidegeld, Michael Hamacher, Christian Stephan, Martin Blüggel, Gerhard Körting, Daniel Chamrad, Christian Scheer, Katrin Marcus, Helmut E. Meyer, Rolf Apweile

Journal:

Year:

2006

Language:

english

File:

PDF, 634 KB

english, 2006

37

Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase

Christian Stephan, Kai A. Reidegeld, Michael Hamacher, André van Hall, Katrin Marcus, Chris Taylor, Philip Jones, Michael Müller, Rolf Apweiler, Lennart Martens, Gerhard Körting, Daniel C. Chamrad, He

Journal:

Year:

2006

Language:

english

File:

PDF, 476 KB

english, 2006

38

HUPO Brain Proteome Project: Summary of the pilot phase and introduction of a comprehensive data reprocessing strategy

Michael Hamacher, Rolf Apweiler, Georg Arnold, Albert Becker, Martin Blüggel, Odile Carrette, Christine Colvis, Michael J. Dunn, Thomas Fröhlich, Michael Fountoulakis, André van Hall, Friedrich Herber

Journal:

Year:

2006

Language:

english

File:

PDF, 227 KB

english, 2006

39

A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies

Lennart Martens, Michael Müller, Christian Stephan, Michael Hamacher, Kai A. Reidegeld, Helmut E. Meyer, Martin Blüggel, Joël Vandekerckhove, Kris Gevaert, Rolf Apweiler

Journal:

Year:

2006

Language:

english

File:

PDF, 360 KB

english, 2006

40

The power of cooperative investigation: Summary and comparison of the HUPO Brain Proteome Project pilot study results

Kai A. Reidegeld, Michael Müller, Christian Stephan, Martin Blüggel, Michael Hamacher, Lennart Martens, Gerhard Körting, Daniel C. Chamrad, David Parkinson, Rolf Apweiler, Helmut E. Meyer, Katrin Marc

Journal:

Year:

2006

Language:

english

File:

PDF, 413 KB

english, 2006

41

Proteomics and Beyond A report on the 3rd Annual Spring Workshop of the HUPO-PSI 21–23 April 2006, San Francisco, CA, USA

Sandra Orchard, Rolf Apweiler, Robert Barkovich, Dawn Field, John S. Garavelli, David Horn, Andy Jones, Philip Jones, Randall Julian, Ruth McNally, Jason Nerothin, Norman Paton, Angel Pizarro, Sean Se

Journal:

Year:

2006

Language:

english

File:

PDF, 282 KB

english, 2006

42

HUPO Brain Proteome Project: Summary of the pilot phase and introduction of a comprehensive data reprocessing strategy

Michael Hamacher, Rolf Apweiler, Georg Arnold, Albert Becker, Martin Blüggel, Odile Carrette, Christine Colvis, Michael J. Dunn, Thomas Fröhlich, Michael Fountoulakis, André van Hall, Friedrich Herber

Journal:

Year:

2006

File:

PDF, 114 KB

2006

43

Proteomics Data Collection – The 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France

Martin Eisenacher, Tanja Hardt, Michael Hamacher, Lennart Martens, Jari Häkkinen, Fredrik Levander, Rolf Apweiler, Helmut E. Meyer, Christian Stephan

Journal:

Year:

2007

Language:

english

File:

PDF, 164 KB

english, 2007

44

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets

Michael Mueller, Juan Antonio Vizcaíno, Philip Jones, Richard Côté, David Thorneycroft, Rolf Apweiler, Henning Hermjakob, Lennart Martens

Journal:

Year:

2008

Language:

english

File:

PDF, 373 KB

english, 2008

45

Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria

Jun Zhang, Xiaohai Li, Michael Mueller, Yueju Wang, Chenggong Zong, Ning Deng, Thomas M. Vondriska, David A. Liem, Jeong-In Yang, Paavo Korge, Henry Honda, James N. Weiss, Rolf Apweiler, Peipei Ping

Journal:

Year:

2008

Language:

english

File:

PDF, 526 KB

english, 2008

46

Proteomics Data Collection – 2nd ProDaC Workshop 5 October 2007, Seoul, Korea

Martin Eisenacher, Tanja Hardt, Michael Hamacher, Lennart Martens, Jari Häkkinen, Fredrik Levander, Rolf Apweiler, Helmut E. Meyer, Christian Stephan

Journal:

Year:

2008

Language:

english

File:

PDF, 238 KB

english, 2008

47

Wiley-VCH and HUPO: A Global Effort to Advance Proteomic Science

Peipei Ping, John Bergeron, Rolf Apweiler

Journal:

Year:

2008

Language:

english

File:

PDF, 191 KB

english, 2008

48

The Gene Ontology — Providing a Functional Role in Proteomic Studies

Emily C. Dimmer, Rachael P. Huntley, Daniel G. Barrell, David Binns, Sorin Draghici, Evelyn B. Camon, Mike Hubank, Philippa J. Talmud, Rolf Apweiler, Ruth C. Lovering

Journal:

Year:

2008

Language:

english

File:

PDF, 886 KB

english, 2008

49

Cardiovascular GO Annotation Initiative Year 1 Report: Why Cardiovascular GO?

Ruth C. Lovering, Emily Dimmer, Varsha K. Khodiyar, Daniel G. Barrell, Peter Scambler, Mike Hubank, Rolf Apweiler, Philippa J. Talmud

Journal:

Year:

2008

Language:

english

File:

PDF, 291 KB

english, 2008

50

Proteomics Data Collection – 3rd ProDaC Workshop April 22nd 2008, Toledo, Spain

Martin Eisenacher, Tanja Hardt, Lennart Martens, Jari Häkkinen, Rolf Apweiler, Michael Hamacher, Helmut E. Meyer, Christian Stephan

Journal:

Year:

2008

Language:

english

File:

PDF, 190 KB

english, 2008